sub-sampling pattern
cagladbahadir/LOUPE
See abstract and paper for more details. RandomMask: Creates a random uniform mask between 0 and 1 for the thresholding function. Learning-based Optimization of the Under-sampling Pattern in MRI Acquisition of Magnetic Resonance Imaging (MRI) scans can be accelerated by under-sampling in k-space (i.e., the Fourier domain). In this paper, we consider the problem of optimizing the sub-sampling pattern in a data-driven fashion. Since the reconstruction model's performance depends on the sub-sampling pattern, we combine the two problems.
Learning-based Optimization of the Under-sampling Pattern in MRI
Bahadir, Cagla Deniz, Dalca, Adrian V., Sabuncu, Mert R.
Acquisition of Magnetic Resonance Imaging (MRI) scans can be accelerated by under-sampling in k-space (i.e., the Fourier domain). In this paper, we consider the problem of optimizing the sub-sampling pattern in a data-driven fashion. Since the reconstruction model's performance depends on the sub-sampling pattern, we combine the two problems. For a given sparsity constraint, our method optimizes the sub-sampling pattern and reconstruction model, using an end-to-end learning strategy. Our algorithm learns from full-resolution data that are under-sampled retrospectively, yielding a sub-sampling pattern and reconstruction model that are customized to the type of images represented in the training data. The proposed method, which we call LOUPE (Learning-based Optimization of the Under-sampling PattErn), was implemented by modifying a U-Net, a widely-used convolutional neural network architecture, that we append with the forward model that encodes the under-sampling process. Our experiments with T1-weighted structural brain MRI scans show that the optimized sub-sampling pattern can yield significantly more accurate reconstructions compared to standard random uniform, variable density or equispaced under-sampling schemes.
Learning Data Triage: Linear Decoding Works for Compressive MRI
ABSTRACT The standard approach to compressive sampling considers recovering an unknown deterministic signal with certain known structure, and designing the sub-sampling pattern and recovery algorithm based on the known structure. This approach requires looking for a good representation that reveals the signal structure, and solving a non-smooth convex minimization problem (e.g., basis pursuit). In this paper, another approach is considered: We learn a good sub-sampling pattern based on available training signals, without knowing the signal structure in advance, and reconstruct an accordingly sub-sampled signal by computationally much cheaper linear reconstruction. We provide a theoretical guarantee on the recovery error, and show via experiments on real-world MRI data the effectiveness of the proposed compressive MRI scheme. Index Terms-- Compressive sampling, magnetic resonance imaging (MRI), learning, least squares estimation, submodular minimization 1. INTRODUCTION The standard theory of compressive sampling (CS) considers recovering an unknown deterministic signal with certain known structure, and designing sampling and recovery schemes based on the known structure [11].